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Table 2 miRTarBase results

From: A Novel Biclustering Algorithm for the Discovery of Meaningful Biological Correlations between microRNAs and their Target Genes

α

N ( % / % )

level 1

max level

best level

time (s)

  

#cc

p MF

p BP

µ q

 

lev

#cc

p MF

p BP

µ q

 

lev

#cc

p MF

p BP

µ q

 

HOCCLUS2

0.1

10/37

75

1.000

1.000

1.00

 

6

5

0.281

0.289

0.13

 

2

38

0.000

0.000

0.72

10

0.2

      

5

10

0.064

0.060

0.24

 

2

38

0.000

0.000

0.72

9

0.3

      

4

18

0.000

0.000

0.40

 

2

38

0.000

0.000

0.72

9

0.4

      

4

23

0.000

0.000

0.49

 

2

38

0.000

0.000

0.72

10

0.5

      

3

33

0.000

0.000

0.66

 

2

38

0.000

0.000

0.72

9

HOCCLUS (with METIS)

0.1

100/100

75

0.000

0.003

0.19

 

3

51

0.013

0.031

0.09

 

1

75

0.000

0.003

0.19

51

0.2

      

2

73

0.000

0.007

0.14

 

1

75

0.000

0.003

0.19

82

0.3

      

1

75

0.000

0.003

0.19

 

1

75

0.000

0.003

0.19

94

0.4

      

1

75

0.000

0.003

0.19

 

1

75

0.000

0.003

0.19

94

0.5

      

1

75

0.000

0.003

0.19

 

1

75

0.000

0.003

0.19

92

ROCC

-

35/17

198

0.231

1.000

0.01

 

-

-

-

-

-

 

-

-

-

-

-

149

  1. miRTarBase results. N ( % / % ) represents the percentage of biclustered mRNAs and miRNAs. #cc is the number of biclusters. lev represents the level number. Results do not vary at the first level since it does not depend on the α value. β does not influence results because of binary interaction scores.