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Table 1 Computation time for each sequence length (1 million sequences)

From: Acceleration of sequence clustering using longest common subsequence filtering

 

100 bases

150 bases

400 bases

CD-HIT

41m40s

 

45m15s

 

1h4m29s

 

LCS-HIT

7m10s

(5.8)

13m45s

(3.3)

31m22s

(2.1)