Table 2 Computation time for each sequence length (2 million sequences)
From: Acceleration of sequence clustering using longest common subsequence filtering
| Â | 100 bases | 150 bases | 400 bases | |||
|---|---|---|---|---|---|---|
CD-HIT | 2h11m47s | Â | 2h17m56s | Â | 2h50m38s | Â |
LCS-HIT | 18m42s | (7.1) | 31m41s | (4.4) | 1h7m26s | (2.5) |