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Table 2 Computation time for each sequence length (2 million sequences)

From: Acceleration of sequence clustering using longest common subsequence filtering

  100 bases 150 bases 400 bases
CD-HIT 2h11m47s   2h17m56s   2h50m38s  
LCS-HIT 18m42s (7.1) 31m41s (4.4) 1h7m26s (2.5)