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Table 3 Computation time for each sequence length (5 million sequences)

From: Acceleration of sequence clustering using longest common subsequence filtering

  100 bases 150 bases 400 bases
CD-HIT 11h17m22s   11h28m17s   14h57m56s  
LCS-HIT 2h11m09s (5.2) 3h4m43s (3.7) 6h42m23s (2.2)