Table 3 Computation time for each sequence length (5 million sequences)
From: Acceleration of sequence clustering using longest common subsequence filtering
| Â | 100 bases | 150 bases | 400 bases | |||
|---|---|---|---|---|---|---|
CD-HIT | 11h17m22s | Â | 11h28m17s | Â | 14h57m56s | Â |
LCS-HIT | 2h11m09s | (5.2) | 3h4m43s | (3.7) | 6h42m23s | (2.2) |