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Table 3 Transcription factor binding sites overrepresented in genes of the identified subnetwork and of its core.

From: Identification of highly synchronized subnetworks from gene expression data

The identified subnetwork

 

Core of the identified subnetwork

TF

gene hits1

gene non-hits

All gene hits

all non-hits

Z-score

 

TF

gene hits

gene non-hits

All gene hits

all non-hits

Z-score

DOT

131

3902

682

4445

38.7

 

DOT6

6

0

682

4445

25.6

TOD

116

405

639

4488

32.3

 

TOD6

4

2

639

4488

16.3

FKH

98

423

705

4422

17.0

 

SFP1

4

2

1203

3924

12.3

SFP1

153

368

1203

3924

15.3

 

MGA1

3

3

1320

3807

11.1

MCM

346

175

3125

2002

13.7

 

STB3

4

2

1139

3988

9.14

  1. 1: "gene hits" is the number of genes that contain the TFBS.
  2. 2: Note that the sum of columns 2 and 3 is 521, rather than 524, the total number of genes in the subnetwork. This is because that 3 out of the 524 genes do not have entries in oPOSSUM.