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Table 1 MGC performance by GC ranges.

From: MGC: a metagenomic gene caller

Model Ranges

10% Ranges

5% Ranges

2.5% Ranges

Genomes

Sp

Sn

H.M

Sp

Sn

H.M

Sp

Sn

H.M

M. jannaschii

97.19±0.12

92.63±0.19

94.85±0.13

97.240.14±

92.78±0.18

94.85±0.11

97.10±0.10

92.67±0.18

94.84±0.12

A. fulgidus

95.04±0.14

83.87±0.18

89.11±0.11

94.950.16±

83.75±0.21

89.00±0.15

94.30±0.18

84.41±0.22

89.08±0.14

B. subtilis

96.68±0.13

88.06±0.17

92.17±0.12

96.63±0.12

88.03±0.18

92.13±0.14

96.20±0.09

87.81±0.13

91.82±0.09

B. aphidicola

98.01±0.19

91.11±0.37

94.43±0.23

98.00±0.17

90.82±0.39

94.27±0.25

97.89±0.22

90.54±0.34

94.07±0.22

W. endosymbiont

88.25±0.35

87.85±0.17

88.05±0.24

87.940.29±

87.99±0.24

87.97±0.23

87.39±0.26

88.15±0.18

87.77±0.21

N. pharaonis

95.28±0.12

85.79±0.20

90.29±0.14

94.91±0.11

85.29±0.30

89.84±0.19

94.41±0.13

81.60±0.26

87.54±0.17

E. coli

96.47±0.08

87.73±0.16

91.92±0.08

96.44±0.09

87.65±0.14

91.84±0.07

95.66±0.09

86.64±0.14

90.93±0.09

H. pylori

97.77±0.14

89.70±0.22

93.56±0.17

97.81±0.10

89.59±0.19

93.52±0.14

97.73±0.09

88.96±0.23

93.14±0.16

P. aeruginosa

96.16±0.09

91.70±0.11

93.88±0.08

95.93±0.09

91.53±0.09

93.67±0.07

95.72±0.08

89.17±0.13

92.33±0.09

C. tepidum

93.42±0.14

79.08±0.24

85.65±0.18

93.33±0.15

79.04±0.19

85.59±0.14

92.37±0.14

77.94±0.18

84.54±0.14

B. pseudomallei

94.79±0.13

87.84±0.25

91.18±0.18

94.46±0.12

87.59±0.24

90.90±0.16

93.99±0.13

85.86±0.19

89.74±0.15

C. jeikeium

96.13±0.11

87.70±0.23

91.72±0.17

95.81±0.08

87.53±0.23

91.48±0.15

85.02±0.14

95.56±0.26

89.98±0.20

P. marinus

97.71±0.11

87.92±0.20

92.55±0.12

97.57±0.13

88.28±0.20

92.69±0.14

88.04±0.14

97.47±0.24

92.51±0.13

Average

95.51

87.76

91.44

95.37

87.67

91.32

94.97

86.70

90.61

Average S.D.

0.14

0.20

0.15

0.14

0.21

0.15

0.14

0.21

0.15

  1. This table presents the gene prediction performance of MGC using the 10%, 5% and 2.5% models. Sensitivity (Sn), Specificity (Sp) and Harmonic Mean (H.M) scores are measured on 700 bp randomly excited fragments from each test genome to 5-fold coverage and repeated 10 times.