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Table 3 TIS accuracy comparison between MGC and Orphelia.

From: MGC: a metagenomic gene caller

 

MGC

Orphelia

Genomes

TIScorrectness

TIScorrectness

M. jannaschii

64.12 ± 0.84

51.03 ± 0.85

A. fulgidus

66.26 ± 0.39

51.10 ± 0.60

B. subtilis

65.47 ± 0.22

58.85 ± 0.25

B. aphidicola

84.15 ± 0.70

65.30 ± 1.44

W. endosymbiont

72.06 ± 0.81

63.41 ± 0.94

N. pharaonis

71.46 ± 0.35

59.43 ± 0.63

E. coli

72.74 ± 0.27

64.24 ± 0.35

H. pylori

68.55 ± 0.71

60.37 ± 0.71

P. aeruginosa

68.86 ± 0.42

61.09 ± 0.35

C. tepidum

69.49 ± 0.65

53.93 ± 0.71

B. pseudomallei

67.85 ± 0.46

56.11 ± 0.69

C. jeikeium

71.33 ± 0.69

60.29 ± 0.57

P. marinus

71.18 ± 0.37

68.32 ± 0.38

Average

70.89

59.50

Average S.D.

0.53

0.68

  1. TIScorrectness scores are measured on 700 bp randomly excited fragments from each test genome to 5-fold coverage and repeated 10 times.