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Table 1 RMSD, LDME and the CPU time in seconds for PDB:1GPV protein.

From: Solving the molecular distance geometry problem with inaccurate distance data

 

Fragment with 100 atoms

 

ε = 0.00

ε = 0.08

 

LDME

RMSD

TIME

LDME

RMSD

TIME

dgsol

8.29E-03

3.93E-01

3.61E+00

3.31E-03

8.25E-01

4.40E+00

buildup

3.50E-15

1.46E-14

1.08E-01

0.00E+00

3.13E-01

1.08E-01

lsbuild

6.47E-15

1.20E-14

1.51E-01

0.00E+00

7.77E-02

1.33E-01

 

Fragment with 200 atoms

 

ε = 0.00

ε = 0.08

 

LDME

RMSD

TIME

LDME

RMSD

TIME

dgsol

3.18E-02

2.58E+00

1.48E+01

4.00E-03

2.45E+00

1.73E+01

buildup

4.85E-15

2.45E-14

3.11E-01

0.00E+00

5.18E-01

3.11E-01

lsbuild

1.90E-14

5.21E-14

6.01E-01

0.00E+00

4.21E-01

5.25E-01

  1. Results for the fragments made up with the first 100 and 200 atoms of protein PDB:1GPV. The 〈LDME〉 and 〈RMSD〉 represent the LDME and RMSD measures respectively and 〈TIME〉 represents the mean time in seconds.