Figure 6
From: Adaptable probabilistic mapping of short reads using position specific scoring matrices
Sensitivity as a function of PPV for BWA-PSSM, BWA, BWA-MEM and Bowtie2 for the xeno mapping experiment. Single-end Illumina reads from D. melanogaster are mapped to the D. simulans genome using the five mappers. Plots are shown for short reads (a), long low quality reads (b) and long high quality reads (c). The curves for each mapping program were obtained by filtering for varying mapping qualities. The results are based on the data in Table 5. Bowtie and GEM are excluded as they do not provide MapQ scores.