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Table 2 Validation measures for SOM training: standard (sSOM) and biological (bSOM) for the full datasets

From: Improving clustering with metabolic pathway data

  sSOM   bSOM  
α 0.00 0.25 0.50 0.75
Solanum lycopersicum
C ¯ 0.79 0.80 0.80 0.81
S ¯ 0.68 0.67 0.66 0.64
D B 8.80 9.07 9.12 10.64
D 0.18 0.14 0.13 0.26
P ¯ 3.32 2.65 2.38 1.80
G 1.09 0.63 0.59 0.52
Arabidopsis thaliana
C ¯ 0.51 0.52 0.51 0.51
S ¯ 1.00 1.00 1.00 1.00
D B 13.30 12.02 10.35 12.19
D 0.16 0.15 0.16 0.13
P ¯ 3.13 3.10 2.80 2.00
G 0.68 0.41 0.43 0.32