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Table 2 Validation measures for SOM training: standard (sSOM) and biological (bSOM) for the full datasets

From: Improving clustering with metabolic pathway data

 

sSOM

 

bSOM

 

α

0.00

0.25

0.50

0.75

Solanum lycopersicum

C ¯

0.79

0.80

0.80

0.81

S ¯

0.68

0.67

0.66

0.64

D B

8.80

9.07

9.12

10.64

D

0.18

0.14

0.13

0.26

P ¯

3.32

2.65

2.38

1.80

G

1.09

0.63

0.59

0.52

Arabidopsis thaliana

C ¯

0.51

0.52

0.51

0.51

S ¯

1.00

1.00

1.00

1.00

D B

13.30

12.02

10.35

12.19

D

0.16

0.15

0.16

0.13

P ¯

3.13

3.10

2.80

2.00

G

0.68

0.41

0.43

0.32