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Table 3 Detail of patterns and common pathways for sSOM vs. bSOM

From: Improving clustering with metabolic pathway data

Algorithm → sSOM bSOM
Cluster A Serine Serine
  Threonine Threonine
  Valine Valine
  Glycine Isoleucine
  Lysine  
Common ko00260, ko00290 ko00260, ko00290
pathways ko00970, map1060 ko00970, map1060
  ko02010 ko02010
  ko00460 ko00966
Cluster B Arginine Arginine
  β-alanine Glycine
  GABA Lysine
Common ko00330, ko00410 ko00310, ko00970
pathways ko04080 map1060, map1064
   ko02010
Cluster C LE31F17 LE31F17
  LE30O12 LE16F20
  LE26F02  
Common - ko00052
pathways   ko00511, ko00531
   ko00600, ko00604
Cluster D Sucrose Sucrose
  Aspartate Glutamate
  5oxoproline Proline
   LE23B16
   LE23N08
Common ko02010 ko02010
pathways   ko00330, ko00970
  1. *does not participate in a well-known pathway.
  2. Gene transcript codes. LE31F17: beta-galactosidase (GB acc# AAC25984); LE16F20: beta-galactosidase (GB acc# AAC25984); LE30O12: no data; LE26F02: component of oligomeric golgi complex, putative (GB acc# XP_00251994); LE23B16: CDPK-related protein kinase (GB acc# AAZ83348); LE23N08: no data.
  3. Pathway codes. ko00260: Glycine, serine and threonine metabolism; ko00290: Valine, leucine and isoleucine biosynthesis; ko00970: Aminoacyl-tRNA biosynthesis; map01060: Biosynthesis of plant secondary metabolites; ko02010: ABC transporters; ko00460: Cyanoamino acid metabolism; ko00966: Glucosinolate biosynthesis; ko00330: Arginine and proline metabolism; ko00410: beta-Alanine metabolism; ko04080: Neuroactive ligand-receptor interaction; ko00310: Lysine degradation; map01064: Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid; ko00052: Galactose metabolism; ko00511: Other glycan degradation; ko00531: Glycosaminoglycan degradation; ko00600: Sphingolipid metabolism; ko00604: Glycosphingolipid biosynthesis.