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Table 2 Centre genes identified in top-1000/500 SNPs interactions on AMD dataset

From: Cloud computing for detecting high-order genome-wide epistatic interaction via dynamic clustering

# Genes per Centre genes from gene-only SNP analyses
interaction Centre genes # Interacting genes
  CFH: complement factor H 777
  ZNF25: zinc finger protein 25 23
2 SGCD: sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) 23
  LRIG3: leucine-rich repeats and immunoglobulin-like domains 3 14
  DRD1: dopamine receptor D1 11
  ISCA1: iron-sulfur cluster assembly 1 11
  CFH: complement factor H 815
  DRD1: dopamine receptor D1 63
3 ATM: ataxia telangiectasia mutated 47
  GPC5: glypican 5 43
  NPAT: nuclear protein, ataxia-telangiectasia locus 34
  KDM4C: lysine (K)-specific demethylase 4C 25
  CFH: complement factor H 459
  ATM: ataxia telangiectasia mutated 191
4 NPAT: nuclear protein, ataxia-telangiectasia locus 115
  LRIG3: leucine-rich repeats and immunoglobulin-like domains 3 73
  TGFBR2: transforming growth factor, beta receptor II (70/80kDa) 38
  ACP1: acid phosphatase 1, soluble 35
  1. Note: Gene in boldface indicates the first time to appear in the table.