Skip to main content

Table 1 Predicates

From: Improved multi-level protein–protein interaction prediction with semantic-based regularization

Target predicates

boundp(p,p’)

true iff the protein pair (p,p’) is bound

boundd(d,d’)

true iff the domain pair (d,d’) is bound

boundr(r,r’)

true iff the residue pair (r,r’) is bound

Given predicates

parentpd(p,d)

true iff protein p is parent of domain d

parentdr(d,r)

true iff domain d is parent of residue r

parentpr(p,r)

true iff protein p is parent of residue r

hasdom(p)

true iff protein p has at least one domain

hasres(d)

true iff domain d has at least one residue

  1. List of predicates used by SBR.