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Table 2 Comparison between m-HMM and SegSeq in simulation study 1

From: Copy number variation detection using next generation sequencing read counts

  

m-HMM

SegSeq

Gain

Sensitivity

0.917

0.000

EFNR

0.097

0.000

Normal

Specificity

0.996

0.998

EFPR

0.002

0.019

Loss or absent

Sensitivity

0.898

0.076

EFNR

0.223

0.678

  1. Sensitivities and empirical false negatives rates for copy number gain, loss and absent states, as well as d positive rates for the normal state in the first simulation study.