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Table 2 Comparison between m-HMM and SegSeq in simulation study 1

From: Copy number variation detection using next generation sequencing read counts

   m-HMM SegSeq
Gain Sensitivity 0.917 0.000
EFNR 0.097 0.000
Normal Specificity 0.996 0.998
EFPR 0.002 0.019
Loss or absent Sensitivity 0.898 0.076
EFNR 0.223 0.678
  1. Sensitivities and empirical false negatives rates for copy number gain, loss and absent states, as well as d positive rates for the normal state in the first simulation study.