Table 4 Counts of correctly detected CNV segments and false positively detected normal segments, comparing between m-HMM, SegSeq and CNVnator in simulation study 3
From: Copy number variation detection using next generation sequencing read counts
| Â | Detected | m-HMM | SegSeq | CNVnator | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | CNV segment counts | 1 kb | 5 kb | 10kb | 1 kb | 5 kb | 10 kb | 1 kb | 5 kb | 10 kb |
Gain | Correct detection | 10 | 10 | 10 | 7 | 10 | 10 | 6 | 9 | 10 |
Loss or absent | Correct detection | 9 | 10 | 10 | 7 | 4 | 6 | 8 | 10 | 10 |
Normal | False positives | 0 | 0 | 3 | 1 | 7 | 6 | 436 | 466 | 399 |