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Table 4 Counts of correctly detected CNV segments and false positively detected normal segments, comparing between m-HMM, SegSeq and CNVnator in simulation study 3

From: Copy number variation detection using next generation sequencing read counts

  Detected m-HMM SegSeq CNVnator
  CNV segment counts 1 kb 5 kb 10kb 1 kb 5 kb 10 kb 1 kb 5 kb 10 kb
Gain Correct detection 10 10 10 7 10 10 6 9 10
Loss or absent Correct detection 9 10 10 7 4 6 8 10 10
Normal False positives 0 0 3 1 7 6 436 466 399
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