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Table 7 This table lists the detected CNV segments that are longer than 2 Mb and presents greater than 2-fold normalized read count differences between B73 and Mo17

From: Copy number variation detection using next generation sequencing read counts

  Start Position End Position Mo17/B73
chr 1 7,674,194 10,130,535 0.47
  73,051,891 76,150,311 0.49
  78,765,566 80,973,937 0.40
  106,020,503 108,085,310 0.46
  183,346,370 185,514,363 0.34
  185,561,332 187,744,738 0.34
  206,016,332 208,795,988 0.49
chr 2 14,327,370 17,154,616 0.49
  43,421,667 45,665,032 0.47
  53,360,846 57,062,635 0.48
  101,464,135 103,592,856 0.37
  173,361,552 175,485,424 0.46
  183,250,632 186,406,359 0.46
  209,163,585 211,227,635 0.48
  211,597,012 214,704,617 0.48
chr 3 3,653,572 5,790,383 0.44
  45,465,224 48,749,064 0.40
  82,020,005 84,053,318 0.48
  176,248,175 179,361,747 0.48
chr 4 645 2,454,064 0.45
  23,025,833 25,854,581 0.48
  136,792,400 140,387,061 0.36
  140,502,832 143,245,529 0.49
  146,672,844 148,733,733 0.44
  239,597,061 242,255,833 0.48
  243,186,165 245,433,834 0.49
chr 5 753,941 4,311,600 0.48
  5,201,605 7,723,585 0.48
  11,328,383 14,574,771 0.49
  16,611,265 19,032,650 0.44
  68,583,278 71,949,086 0.40
  156,325,001 158,697,338 0.47
  168,069,569 170,816,075 0.39
  176,121,726 179,598,151 0.43
  191,459,521 195,013,031 0.48
chr 6 25,898,308 28,476,332 0.33
  70,440,134 72,858,938 0.46
  76,981,074 80,570,101 0.46
  85,620,416 87,659,132 0.48
  102,350,617 104,422,628 0.49
  154,917,250 159,407,299 0.47
  162,488,577 165,722,159 0.48
chr 7 18,304,500 22,673,932 0.49
  25,498,467 30,547,169 0.47
  78,344,496 81,198,663 0.40
  110,502,115 113,262,773 0.49
  117,913,056 119,946,052 0.49
  120,044,241 122,233,553 0.49
chr 8 20,108,771 23,447,168 0.43
  160,011,805 166,514,647 0.45
  167,430,533 169,880,960 0.45
chr 9 38,523,842 40,732,642 0.41
  46,734,889 49,382,812 0.38
  61,499,201 64,577,206 0.39
  83,491,462 88,345,837 0.46
  118,555,633 121,557,270 0.49
  143,196,239 145,630,853 0.45
  145,813,631 150,079,829 0.46
chr 10 20,262,176 24,734,243 0.48
  39,046,734 41,852,436 0.46
  72,370,857 74,553,412 0.42
  111,247,775 116,238,001 0.46
  117,013,634 120,679,932 0.49
  121,011,209 124,203,304 0.49
  130,590,451 139,841,271 0.46
  1. The last column Mo17/B73 represents the normalized ratio of read counts between Mo17 and B73 for the genomic region between the start position and the end position. The normalization factor c0 = 0.493.
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