Skip to main content
Figure 2 | BMC Bioinformatics

Figure 2

From: Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase

Figure 2

A comparison of loops in the BT_1012 (3KZS) structure and mannanase enzymes. Structure alignment of the N-terminal domain of the BT_1012 (3KZS) structure, corresponding to the DUF4038 domain (green) and the family GH5 endo-beta-mannanase from Lycopersicon esculentum (tomato) (PDB 1RH9) (blue), (Panel A) and Chrysonilia sitophila endo-beta-D-1,4- mannanase (4AWE) colored purple (Panel B). Black arrows shows extended loops. The active site is shown in red. According to the database of secondary structure assignments (DSSP) the N-terminal domain of the BT_1012 (3KZS) has 51% of coil secondary structure, compared to 39% in 1RH9 45% in 4AWE.

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us