Figure 3
From: Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs
The computing process in a dense mass window. The figure shows the calculation in one dense mass window. The result is a Scor[TH][TW × TDimY], which is equal to theo[TH][N t ] × expe[N c ][TW × TDimY]. Load the first tile (in blue) from the theo into the shared memory; score the blue tile in the theo with the blue tile in the expe, which is stored in the texture memory; accumulate the temporary results into TResult, whose initial value is zero; then repeat loading the next tile (in orange), scoring and accumulating, until theo[TH][N t ] and expe[N c ][TW × TDimY] have all been accessed.