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Table 4 Speedup effect of SDP using a single GPU

From: Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs

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Exp. 1

Exp. 2

Exp.3

CPU

968 s

32587 s

5529 s

GPU

35 s

502 s

191 s

Speedup

27

65

29

  1. Note: in Exp.1, threshold is set to 1, whereas in Exp. 2, threshold is set to 2.
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BMC Bioinformatics

ISSN: 1471-2105

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