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Table 4 Speedup effect of SDP using a single GPU

From: Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs

Search engines Exp. 1 Exp. 2 Exp.3
CPU 968 s 32587 s 5529 s
GPU 35 s 502 s 191 s
Speedup 27 65 29
  1. Note: in Exp.1, threshold is set to 1, whereas in Exp. 2, threshold is set to 2.