Filters | TP1 | TN2 | FP3 | FN4 | Sensitivity TP/(TP+FN) | Specificity TN/(TN+FP) | |
---|---|---|---|---|---|---|---|
Genotype | Variant | ||||||
None | None | 73,537 | 621,855 | 661 | 551 | 99.26% | 99.89% |
None | VQSR | 73,069 | 608,065 | 108 | 493 | 99.33% | 99.98% |
DP | None | 72,104 | 611,606 | 627 | 236 | 99.67% | 99.90% |
GQ | None | 72,689 | 610,682 | 460 | 225 | 99.69% | 99.92% |
DP & GQ | None | 71,986 | 610,108 | 446 | 220 | 99.70% | 99.93% |
DP & GQ | VQSR | 71,552 | 597,070 | 36 | 168 | 99.77% | 99.99% |