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Table 1 Comparison of the supported features in GSA tools

From: gsGator: an integrated web platform for cross-species gene set analysis

Tool name

Annotation types

Multiple GSA

Cross-species GSA

Set operation (-,∩,∪)

Network analysis & visualization

No. species

Ref.

GO & pathway

Genomic annotation

Molecular network

Phenotype

miRNA target

gsGator

O

O

O

O

O

O

O

O

O

7 species

 

DAVID

O

O

O

O

 

O

 

O

 

All species

[1]

g:Profiler

O

 

O

O

O

O

O

  

85 species

[4]

Algal Functional Annotation Tool

O

O

       

2 fungal species

[10]

GeneTerm Linker

O

O

       

H. sapiens yeast

[11]

KOBAS 2.0

O

  

O

  

O

  

1327 species

[12]

ADGO 2.0

O

  

O

     

8 species

[13]

ToppCluster

O

O

O

O

O

O

   

H. sapiens

[6]

PhenoFam

 

O

       

48 species

[14]

agriGO

O

        

38 species

[15]

Lists2Networks

O

O

O

O

O

O

 

O

O

Mammals

[16]

GeneCodis3

O

O

   

O

 

O

 

16 species

[2]

FuncAssociate (ver 2.0)

O

        

37 species

[17]

GeneWeaver

O

  

O

O

O

O

O

 

9 species

[18]