Skip to main content

Advertisement

Table 2 The coverage of gene functional annotation and molecular networks by major annotation DBs

From: gsGator: an integrated web platform for cross-species gene set analysis

   Hs At Ce Dm Mm Ec Sc Total gain
  Total number of genes 42,059 33,584 45,727 22,930 57,992 4,497 6,353  
All annotation Number of annotated genes (% Coverage) 34,710 (82.5%) 27,274 (81.2%) 18,734 (41.0%) 20,106 (87.7%) 48,128 (83.0%) 2,531 (56.3%) 6,303 (99.2%)  
Phenotype Annotation Genes with phenotype annotation (% Coverage) 17,198 (40.9%) 0 6,513 (14.2%) 16,665 (72.7%) 9,966 (17.2%) 0 5,620 (88.5%)  
The gain of inferred annotation by orthology for human genes (% Coverage)   0 447 (1.1%) 848 (2%) 377 (0.9%) 0 583 (1.4%) 2,255 (5.4%)
PPI Genes connected by PPI network (% Coverage) 9,621 (22.9%) 6,911 (20,6%) 2,681 (5.9%) 5,622 (24.5%) 1,588 (2.7%) 47 (1.0%) 5,479 (86.2%)  
The gain of PPI network coverage by ortholgy (% Coverage)   1,814 (4.3%) 634 (1.5%) 1,365 (3.2%) 138 (0.3%) 0 1,658 (3.9%) 5,609 (13.3%)