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Table 2 The coverage of gene functional annotation and molecular networks by major annotation DBs

From: gsGator: an integrated web platform for cross-species gene set analysis

  

Hs

At

Ce

Dm

Mm

Ec

Sc

Total gain

 

Total number of genes

42,059

33,584

45,727

22,930

57,992

4,497

6,353

 

All annotation

Number of annotated genes (% Coverage)

34,710 (82.5%)

27,274 (81.2%)

18,734 (41.0%)

20,106 (87.7%)

48,128 (83.0%)

2,531 (56.3%)

6,303 (99.2%)

 

Phenotype Annotation

Genes with phenotype annotation (% Coverage)

17,198 (40.9%)

0

6,513 (14.2%)

16,665 (72.7%)

9,966 (17.2%)

0

5,620 (88.5%)

 

The gain of inferred annotation by orthology for human genes (% Coverage)

 

0

447 (1.1%)

848 (2%)

377 (0.9%)

0

583 (1.4%)

2,255 (5.4%)

PPI

Genes connected by PPI network (% Coverage)

9,621 (22.9%)

6,911 (20,6%)

2,681 (5.9%)

5,622 (24.5%)

1,588 (2.7%)

47 (1.0%)

5,479 (86.2%)

 

The gain of PPI network coverage by ortholgy (% Coverage)

 

1,814 (4.3%)

634 (1.5%)

1,365 (3.2%)

138 (0.3%)

0

1,658 (3.9%)

5,609 (13.3%)