Table 1 Information of the simulated datasets, consisting of the reference genome, length of the genome, coverage, average read length and total number of reads in the dataset
From: HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data
Group | Dataset | Ref genome | Genome length | Coverage | Average read length | Number of reads |
|---|---|---|---|---|---|---|
A | 1 | UTI89 | 5,065,741 | 5.9x | 200 | 150,000 |
2 | UTI89 | 5,065,741 | 9.9x | 200 | 250,000 | |
3 | UTI89 | 5,065,741 | 15.8x | 200 | 400,000 | |
4 | UTI89 | 5,065,741 | 19.7x | 200 | 500,000 | |
5 | O104 | 5,312,586 | 5.6x | 200 | 150,000 | |
6 | O104 | 5,312,586 | 9.4x | 200 | 250,000 | |
7 | O104 | 5,312,586 | 15.1x | 200 | 400,000 | |
8 | O104 | 5,312,586 | 18.8x | 200 | 500,000 | |
B | 9 | UTI89 | 5,065,741 | 11.8x | 400 | 150,000 |
10 | UTI89 | 5,065,741 | 19.7x | 400 | 250,000 | |
11 | UTI89 | 5,065,741 | 31.6x | 400 | 400,000 | |
12 | UTI89 | 5,065,741 | 39.5x | 400 | 500,000 | |
13 | O104 | 5,312,586 | 11.3x | 400 | 150,000 | |
14 | O104 | 5,312,586 | 23.5x | 400 | 250,000 | |
15 | O104 | 5,312,586 | 30.1x | 400 | 400,000 | |
16 | O104 | 5,312,586 | 37.6x | 400 | 500,000 |