Figure 12

Precision, Recall and F-measure with thresholds (Set-up 1). Precision, Recall and F-measure for Cufflinks (left panel) and CEM (right panel). Within each set of bars, the first one (depicted in purple) reports the result for the corresponding method in Mode 1 (without any threshold), as depicted in Figure 2. The last one (depicted in yellow) refers to the same method in Mode 2, as depicted in Figure 2. The two central bars (depicted in magenta and cyan, respectively) refer to the method in Mode 1 when estimated isoforms with expression levels below 10⁻⁵ and 10⁻¹, respectively, are set to zero. The figure refers to Set-up 1, to the case of 20M 100 bp-PE and annotation driven alignment with CA.