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Table 2 Comparative results for the Platinum spike dataset

From: Fold change rank ordering statistics: a new method for detecting differentially expressed genes

Status A vs B Number FCROS FC WAD RP Ttest SAM TREAT
EE 0 13337 216 220 19 221 142 203 176
DE 0.25 192 161 161 158 161 162 161 161
DE 0.28 174 162 163 154 163 157 163 163
DE 0.4 163 132 134 127 133 131 133 133
DE 0.66 189 151 155 147 154 89 149 139
DE 0.83 166 46 43 111 40 118 60 83
EE 1 3426 52 49 232 50 158 56 77
DE 1.5 167 134 134 131 135 114 135 131
DE 1.7 166 150 150 141 150 145 149 149
DE 2 184 161 161 158 162 162 162 161
DE 3 98 94 94 92 94 94 94 94
DE 3.5 445 397 394 382 396 388 393 392
EE/DE MC 231 74 74 77 73 71 74 73
EE/DE MF 14 10 8 11 8 9 8 8
True DE genes detected 1588 1589 1601 1588 1560 1599 1606
Error 18.14% 18.09% 17.47% 18.14% 19.58% 17.57% 17.21%
AUC 0.91054 0.90984 0.92030 0.91077 0.90891 0.91084 0.91094
  1. Platinum Spike dataset: number of genes detected by each method for a given change condition. EE and DE are for equally expressed and differentially expressed, respectively. "A vs B" is the designated fold change and "Number" is the number of probes for each change condition. Detection error and the AUC are also given at the bottom of the Table.