From: Fold change rank ordering statistics: a new method for detecting differentially expressed genes
Dataset | Method | Thresholds | Selection | Runtime (s) | Error |
---|---|---|---|---|---|
DLBCL | FCROS | 0.0228, 0.9773 | 424 | 4.79 | 4.55% |
(n = 7129) | FC | 1.444 | 425 | 0.13 | na |
(m1 = 58, m2 = 19) | WAD | 1.1575 | 424 | 0.14 | na |
RP | 0 | 425 | 656.36 | 0% | |
Ttest | 0.0001 | 428 | 1.48 | 0.17% | |
SAM | 0.00032 | 427 | 26.66 | 0.5% | |
TREAT | 0.0025 | 425 | 0.16 | 4.19% | |
Prostate | FCROS | 0.0356, 0.9644 | 1009 | 19.58 | 7.12% |
(n = 12625) | FC | 1.27 | 1008 | 0.3 | na |
(m1 = 50, m2 = 52) | WAD | 1.0805 | 1010 | 0.32 | na |
RP | 0 | 1010 | 2491.54 | 0% | |
Ttest | 0.00068 | 1008 | 2.72 | 0.85% | |
SAM | 0.00041 | 1013 | 55.6 | 0.51% | |
TREAT | 0.0153 | 1010 | 0.33 | 19.12% | |
Colon | FCROS | 0.0187, 0.9802 | 95 | 0.99 | 3.85% |
(n = 2000) | FC | 1.8 | 95 | 0.05 | na |
(m1 = 22, m2 = 40) | WAD | 1.346 | 95 | 0.08 | na |
RP | 0 | 96 | 168.78 | 0% | |
Ttest | 0.00015 | 97 | 0.5 | 0.3% | |
SAM | 0.00055 | 95 | 7.08 | 1.15% | |
TREAT | 0.00028 | 95 | 0.06 | 0.58% | |
Leukemia | FCROS | 0.028, 0.9717 | 493 | 4.7 | 5.63% |
(n = 7129) | FC | 1.942 | 494 | 0.12 | na |
(m1 = 47, m2 = 25) | WAD | 1.1668 | 494 | 0.17 | na |
RP | 0 | 494 | 768.65 | 0% | |
Ttest | 0.00052 | 494 | 1.43 | 0.75% | |
SAM | 0.00051 | 494 | 28.71 | 0.74% | |
TREAT | 0.00153 | 494 | 0.13 | 2.2% | |
Myeloma | FCROS | 0.01296, 0.987 | 450 | 34.77 | 2.59% |
(n = 12625) | FC | 1.5189 | 452 | 0.4 | na |
(m1 = 36, m2 = 137) | WAD | 1.212 | 449 | 0.49 | na |
RP | 0 | 451 | 4721.73 | 0% | |
Ttest | 0.0051 | 449 | 2.9 | 14.34% | |
SAM | 0.0055 | 450 | 94.84 | 15.43% | |
TREAT | 0.0192 | 451 | 0.54 | 53.75% | |
ALL-1 | FCROS | 0.0355, 0.9644 | 1187 | 22.72 | 7.11% |
(n = 12625) | FC | 1.4176 | 1187 | 0.5 | na |
(m1 = 95, m2 = 33) | WAD | 1.1165 | 1185 | 0.64 | na |
RP | 0 | 1188 | 3108.43 | 0% | |
Ttest | 0.000057 | 1186 | 2.66 | 0.06% | |
SAM | 0.000145 | 1187 | 69.48 | 0.15% | |
TREAT | 0.00117 | 1184 | 0.26 | 1.25% |