Table 4 Number of significant differentially methylated loci detected by each method for each given cutoff p-value
Method | 1e-3 | 1e-4 | 1e-5 | 1e-6 | 1e-7 | 1e-8 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
F | Z | F | Z | F | Z | F | Z | F | Z | F | Z | |
T1 (Combined ANOVA) | 981 | 1079 | 655 | 690 | 479 | 499 | 350 | 375 | 257 | 275 | 189 | 208 |
T2 (Combined KW) | 1359 | 1340 | 823 | 859 | 551 | 590 | 381 | 401 | 261 | 277 | 172 | 185 |
T3 (New) | 2915 | 3117 | 1855 | 1951 | 1283 | 1310 | 905 | 929 | 674 | 686 | 513 | 521 |
T1 and T2 | 926 | 980 | 615 | 656 | 442 | 474 | 306 | 338 | 221 | 235 | 152 | 167 |
T1 and T3 | 931 | 1018 | 639 | 670 | 471 | 491 | 346 | 367 | 252 | 269 | 187 | 206 |
T2 and T3 | 1294 | 1279 | 806 | 832 | 544 | 577 | 377 | 396 | 259 | 276 | 170 | 184 |
T1, T2, and T3 | 895 | 954 | 605 | 642 | 437 | 468 | 303 | 336 | 220 | 234 | 151 | 166 |