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Table 2 Importing BWA align functionality

From: MOIRAI: a compact workflow system for CAGE analysis

Format

Value

Input

input=FASTQ reference=FASTA

Output

output=SAI

Command line

bwa aln -n [error-rate] [reference] [input] > [output]

Command parameter

error-rate=NUMBER

Default value

error-rate=0.04

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BMC Bioinformatics

ISSN: 1471-2105

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