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Table 2 RNA-seq datasets considered in this study

From: Transcriptome dynamics-based operon prediction in prokaryotes

Genome

Conditions

Description (growth condition)

Code

Accession

H. somni

1

A single nucleotide resolution transcriptome profile

HS

GSE29578

P. gingivalis

3

MIN - Defined minimal medium

PG1

GSE30452

TSB - Trypticase soy broth

PG2

BAPH - Sheep blood agar

PG3

E. coli

2

WT in LB + αMG

EC1

GSM1104387-89

WT in LB –αMG

EC2

GSM1104390-92

S. enterica

2

WT (15 minutes after αMG stress)

SE1

GSM1104438

WT (30 minutes after αMG stress)

SE2

GSM1104439