Transcriptome dynamics-based operon prediction in prokaryotes

BMC Bioinformatics

Table 3 Adjacent gene pairs with a confirmed operon status

Confirmed OPs and NOPs	H. somni	P. gingivalis			E. coli		S. enterica
Conditions	HS	PG1	PG2	PG3	EC1	EC2	SE1	SE2
OPs	101	121	124	124	214	232	232	276
NOPs	168	66	53	45	94	100	191	200
#Operons	78	73	69	68	143	137	146	158

For each transcriptome RNA-seq profile the number of confirmed and annotated OPs and NOPs are indicated. These confirmed OPs and NOPs are necessary to build the training/validation and test sets.

ISSN: 1471-2105