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Table 6 Comparison of bootstrap 95% percentile confidence interval of average F-measure between the minimum energy structures and the maximum accuracy structures of the HK-PK and the HK-PK-free data sets

From: A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures

Input structures Min energy Max accuracy Permutation test
Iter. HFold - hotspots PKed (72.83, 83.37) (78.56, 87.05) Not significant
Iter. HFold - hotspots PK-free (74.93, 80.26) (87.70, 90.57) Significant
Iter. HFold - 50 suboptimals PKed (67.70, 79.57) (80.41, 88.14) Significant
Iter. HFold - 50 suboptimals PK-free (76.27, 81.46) (90.05, 93.00) Significant
HotKnots PKed (73.60, 83.35) (84.50, 91.48) Significant
HotKnots PK-free (76.74, 81.95) (88.32, 91.08) Significant