Figure 7
From: KRLMM: an adaptive genotype calling method for common and low frequency variants
Accuracy versus MAF at different drop rates for common variants. Results are plotted for the Omni1-Quad (A and D), Omni2.5-Quad (B and E) and Omni5-Quad (C and F) HapMap samples for each method at drop rates of 1% (top row) and 5% (bottom row) for autosomal SNPs only down to a MAF of 5%. The accuracy of GenCall at MAF of 5% (0.05) is slightly below the lower limit shown in the plot at 0.983 in panel C and 0.984 in panel F.