Figure 8
From: KRLMM: an adaptive genotype calling method for common and low frequency variants
Accuracy stratified by major/minor allele for low frequency variants. Calls involving the major allele only (top row) or minor allele (bottom row) from low frequency SNPs (MAF < 0.05 (5%)) in Omni1-Quad (A and D), Omni2.5-Quad (B and E) and Omni5-Quad (C and F) HapMap samples for each method at a drop rate of 1%. The accuracy of some methods falls below the lower limit plotted in each panel. These values are as follows: panel (C) MAF 0.01: KRLMM 0.796, GenoSNP 0.808, Illuminus 0.789, GenCall 0.799, OptiCall 0.809; panel (E) MAF 0.01: Illuminus 0.607; panel (F) MAF 0.01 KRLMM 0.707, GenoSNP 0.706, Illuminus 0.624, GenCall 0.686, OptiCall 0.708.