Figure 9
From: KRLMM: an adaptive genotype calling method for common and low frequency variants
Examples of SNPs where KRLMM has improved accuracy over other methods. Plots presenting log-ratios (M-values) versus average expression (S-values) for 3 SNPs where KRLMM has perfect agreement with calls from the HapMap database, and the other methods have some level of disagreement are shown (A-O). In each plot, points are color-coded according to the genotype call made by the particular method.