Table 1 Summary of the Illumina data sets analyzed
From: KRLMM: an adaptive genotype calling method for common and low frequency variants
Platform | # SNPs per | Data set for | MAF | # HapMap |
|---|---|---|---|---|
sample | SNP selection | samples | ||
Omni1-Quad | ∼ 1.1 million | HapMap | > 5% | 267 (88:44:45:90:0) |
Omni2.5-Quad | ∼ 2.5 million | 1000 genomes | > 2.5% | 171 (0:43:45:0:83) |
Omni5-Quad | ∼ 4.3 million | 1000 genomes | > 1% | 341 (172:44:40:85:0) |