Table 5 Results for true Sub. Loc. with proxy
From: Joint probabilistic-logical refinement of multiple protein feature predictors
Disulfide bonding state | ||||
|---|---|---|---|---|
Experiment | Q | P | R | F 1 |
Raw predictions | 0.804 ± 0.03 | 0.720 ± 0.06 | 0.917 ± 0.04 | 0.811 ± 0.04 |
Dis. + Met. | 0.838 ± 0.03 | 0.776 ± 0.04 | 0.912 ± 0.04 | 0.838 ± 0.04 |
Dis. + Loc. | 0.853 ± 0.03 | 0.796 ± 0.05 | 0.921 ± 0.03 | 0.853 ± 0.03 |
Dis. + Met. + Loc. | 0.865 ± 0.03 | 0.817 ± 0.04 | 0.917 ± 0.03 | 0.863 ± 0.03 |
HMSVM | 0.874 ± 0.03 | 0.884 ± 0.06 | 0.851 ± 0.03 | 0.866 ± 0.03 |
BRNN | 0.892 ± 0.02 | 0.900 ± 0.03 | 0.863 ± 0.05 | 0.880 ± 0.03 |
Metal bonding state | ||||
Experiment | Q | P | R | F 1 |
Raw predictions | 0.952 ± 0.02 | 0.686 ± 0.09 | 0.827 ± 0.10 | 0.747 ± 0.09 |
Dis. + Met. | 0.952 ± 0.02 | 0.696 ± 0.08 | 0.795 ± 0.11 | 0.739 ± 0.08 |
Dis. + Loc. | – | – | – | – |
Dis. + Met. + Loc. | 0.952 ± 0.02 | 0.695 ± 0.08 | 0.807 ± 0.10 | 0.743 ± 0.08 |
HMSVM | 0.950 ± 0.02 | 0.741 ± 0.12 | 0.697 ± 0.08 | 0.711 ± 0.07 |
BRNN | 0.948 ± 0.02 | 0.683 ± 0.09 | 0.763 ± 0.11 | 0.715 ± 0.07 |