Table 3 Results on ‘ms’ simulated datasets
From: WinHAP2: an extremely fast haplotype phasing program for long genotype sequences
Data sets | Methods | SER | Time (s) | Memory |
|---|---|---|---|---|
#genotype = 200 | 2SNP | 0.037 | 87.8 | 197.0 MB |
#SNPs = 10,000 | Beagle | 0.020 | 121.4 | 481.7 MB |
WinHAP2 | 0.020 | 14.5 | 5.1 MB | |
#genotype = 200 | 2SNP | 0.035 | 2472.0 | 1.7GB |
#SNPs = 50,000 | Beagle | 0.019 | 582.8 | 617.6 MB |
WinHAP2 | 0.024 | 69.9 | 5.1 MB | |
#genotype = 500 | 2SNP | 0.023 | 8404.0 | 1.7GB |
#SNPs = 50,000 | Beagle | Out of memory | ||
WinHAP2 | 0.012 | 340.5 | 12.8 MB | |
#genotype = 500 | 2SNP | Out of memory | ||
#SNPs | Beagle | Out of memory | ||
=1,000,000 | WinHAP2 | 0.012 | 9013.6 | 12.8 MB |