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Table 6 Error rates (false-positive and true-positive rates) of quality scores at various quality score cutoffs for SMART (version 6)

From: On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation

Cutoff

TP

FN

FP

TN

FPR

TPR

0.01

113960

3217

12650

19966

0.38785

0.973

0.02

111450

5727

6610

26006

0.20266

0.951

0.03

109530

7653

4157

28459

0.12745

0.935

0.04

107900

9277

2813

29803

0.08625

0.921

0.05

106480

10702

2070

30546

0.06347

0.909

0.06

105260

11919

1608

31008

0.04930

0.898

0.10

101690

15491

789

31827

0.02419

0.868

0.20

95355

21823

294

32322

0.00901

0.814

0.30

86126

31052

169

32447

0.00518

0.735

0.40

69734

47444

72

32544

0.00221

0.595

0.50

48713

68465

47

32569

0.00144

0.416

0.60

31278

85900

15

32601

0.00046

0.267

0.70

20413

96765

1

32615

0.00003

0.174

0.80

12727

104450

0

32616

0.00000

0.109

0.90

7473

109710

0

32616

0.00000

0.064