Skip to main content

Table 6 Error rates (false-positive and true-positive rates) of quality scores at various quality score cutoffs for SMART (version 6)

From: On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation

Cutoff TP FN FP TN FPR TPR
0.01 113960 3217 12650 19966 0.38785 0.973
0.02 111450 5727 6610 26006 0.20266 0.951
0.03 109530 7653 4157 28459 0.12745 0.935
0.04 107900 9277 2813 29803 0.08625 0.921
0.05 106480 10702 2070 30546 0.06347 0.909
0.06 105260 11919 1608 31008 0.04930 0.898
0.10 101690 15491 789 31827 0.02419 0.868
0.20 95355 21823 294 32322 0.00901 0.814
0.30 86126 31052 169 32447 0.00518 0.735
0.40 69734 47444 72 32544 0.00221 0.595
0.50 48713 68465 47 32569 0.00144 0.416
0.60 31278 85900 15 32601 0.00046 0.267
0.70 20413 96765 1 32615 0.00003 0.174
0.80 12727 104450 0 32616 0.00000 0.109
0.90 7473 109710 0 32616 0.00000 0.064