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Table 7 Error rates (false-positive and true-positive rates) of quality scores at various quality score cutoffs for Pfam (release 27)

From: On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation

Cutoff

TP

FN

FP

TN

FPR

TPR

0.01

2479900

21831

265240

267000

0.49835

0.991

0.05

2384300

117450

79402

452830

0.14919

0.953

0.10

2314800

186960

38684

493550

0.07268

0.925

0.12

2292300

209440

31629

500610

0.05943

0.916

0.13

2281400

220350

28938

503300

0.05437

0.912

0.14

2270400

231360

26412

505820

0.04963

0.908

0.15

2259500

242240

24371

507860

0.04579

0.903

0.20

2201800

299960

16844

515390

0.03165

0.880

0.30

2027300

474450

8670

523570

0.01629

0.810

0.40

1718400

783320

4060

528180

0.00763

0.687

0.50

1277700

1224000

1990

530250

0.00374

0.511

0.60

857990

1643800

978

531260

0.00184

0.343

0.70

571700

1930100

21

532210

0.00004

0.229

0.80

361280

2140500

0

532240

0.00000

0.144

0.90

217480

2284300

0

532240

0.00000

0.087