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Table 7 Error rates (false-positive and true-positive rates) of quality scores at various quality score cutoffs for Pfam (release 27)

From: On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation

Cutoff TP FN FP TN FPR TPR
0.01 2479900 21831 265240 267000 0.49835 0.991
0.05 2384300 117450 79402 452830 0.14919 0.953
0.10 2314800 186960 38684 493550 0.07268 0.925
0.12 2292300 209440 31629 500610 0.05943 0.916
0.13 2281400 220350 28938 503300 0.05437 0.912
0.14 2270400 231360 26412 505820 0.04963 0.908
0.15 2259500 242240 24371 507860 0.04579 0.903
0.20 2201800 299960 16844 515390 0.03165 0.880
0.30 2027300 474450 8670 523570 0.01629 0.810
0.40 1718400 783320 4060 528180 0.00763 0.687
0.50 1277700 1224000 1990 530250 0.00374 0.511
0.60 857990 1643800 978 531260 0.00184 0.343
0.70 571700 1930100 21 532210 0.00004 0.229
0.80 361280 2140500 0 532240 0.00000 0.144
0.90 217480 2284300 0 532240 0.00000 0.087