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Figure 2 | BMC Bioinformatics

Figure 2

From: Scan for Motifs: a webserver for the analysis of post-transcriptional regulatory elements in the 3′ untranslated regions (3′ UTRs) of mRNAs

Figure 2

The input section of Scan for motifs showing the range of supported regulatory elements and background controls. For a pre-aligned human 3′ UTR (e.g. TNF-NM_000594) it defaults to searching for over 60 TransTerm regulatory elements with expectations of E-value ≤ 0.175 by chance in typical human 3′ UTR (~1000 nt) (A in Figure) and TargetScan miRNA binding site predictions for ~150 conserved miRNA families (C). In this case the sites for RNA binding proteins with E-values ≤ 1.0 per thousand (B) and miRBase 8mer seeds (D) are also selected.

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BMC Bioinformatics

ISSN: 1471-2105

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