| Algorithm | Coverage | # Complexes | FRAC | MMR | ACC | PR |
---|---|---|---|---|---|---|---|
 | GMFTP | 1168 | 179 | 0.868 | 0.591 | 0.765 | 0.593 |
 | AP | 1363 | 207 | 0.697 | 0.785 | 0.497 | 0.444 |
 | CFinder | 1161 | 114 | 0.653 | 0.439 | 0.693 | 0.440 |
 | ClusterONE | 1293 | 203 | 0.847 | 0.571 | 0.775 | 0.564 |
 | Linkcomm | 1126 | 407 | 0.903 | 0.646 | 0.744 | 0.456 |
Collins | MCL | 1178 | 187 | 0.840 | 0.537 | 0.779 | 0.529 |
 | MCODE | 853 | 115 | 0.743 | 0.496 | 0.730 | 0.593 |
 | MINE | 1101 | 138 | 0.771 | 0.499 | 0.756 | 0.547 |
 | SPICi | 958 | 124 | 0.708 | 0.448 | 0.728 | 0.570 |
 | SR-MCL | 1304 | 337 | 0.875 | 0.625 | 0.755 | 0.481 |
 | GMFTP | 1464 | 271 | 0.841 | 0.489 | 0.742 | 0.457 |
 | AP | 1815 | 274 | 0.667 | 0.659 | 0.346 | 0.310 |
 | CFinder | 1158 | 137 | 0.638 | 0.378 | 0.701 | 0.424 |
 | ClusterONE | 1624 | 294 | 0.783 | 0.449 | 0.725 | 0.391 |
 | Linkcomm | 1381 | 604 | 0.870 | 0.548 | 0.703 | 0.372 |
Gavin | MCL | 1301 | 240 | 0.696 | 0.421 | 0.713 | 0.422 |
 | MCODE | 899 | 155 | 0.710 | 0.438 | 0.685 | 0.492 |
 | MINE | 1242 | 212 | 0.804 | 0.454 | 0.710 | 0.436 |
 | SPICi | 1008 | 184 | 0.746 | 0.434 | 0.697 | 0.478 |
 | SR-MCL | 1750 | 735 | 0.819 | 0.539 | 0.701 | 0.327 |
 | GMFTP | 1244 | 270 | 0.756 | 0.474 | 0.722 | 0.491 |
 | AP | 2506 | 391 | 0.575 | 0.433 | 0.242 | 0.182 |
 | CFinder | 1143 | 115 | 0.433 | 0.281 | 0.555 | 0.268 |
 | ClusterONE | 2044 | 539 | 0.720 | 0.431 | 0.708 | 0.326 |
 | Linkcomm | 962 | 425 | 0.701 | 0.460 | 0.675 | 0.428 |
Krogan core | MCL | 1933 | 388 | 0.671 | 0.377 | 0.691 | 0.299 |
 | MCODE | 640 | 95 | 0.463 | 0.268 | 0.583 | 0.406 |
 | MINE | 937 | 157 | 0.616 | 0.359 | 0.664 | 0.450 |
 | SPICi | 1249 | 224 | 0.628 | 0.356 | 0.689 | 0.409 |
 | SR-MCL | 2585 | 1833 | 0.884 | 0.575 | 0.686 | 0.197 |
 | GMFTP | 1197 | 265 | 0.652 | 0.398 | 0.692 | 0.469 |
 | AP | 3522 | 461 | 0.461 | 0.232 | 0.117 | 0.096 |
 | CFinder | 914 | 88 | 0.287 | 0.172 | 0.543 | 0.277 |
 | ClusterONE | 1114 | 239 | 0.481 | 0.296 | 0.633 | 0.407 |
 | Linkcomm | 1925 | 998 | 0.652 | 0.424 | 0.687 | 0.317 |
Krogan extended | MCL | 2973 | 531 | 0.503 | 0.254 | 0.636 | 0.190 |
 | MCODE | 619 | 84 | 0.343 | 0.188 | 0.506 | 0.345 |
 | MINE | 902 | 162 | 0.564 | 0.316 | 0.650 | 0.451 |
 | SPICi | 1584 | 295 | 0.525 | 0.258 | 0.645 | 0.311 |
 | SR-MCL | 3637 | 2644 | 0.702 | 0.431 | 0.617 | 0.154 |
 | GMFTP | 1705 | 376 | 0.580 | 0.296 | 0.639 | 0.329 |
 | AP | 4662 | 517 | 0.441 | 0.219 | 0.091 | 0.086 |
 | CFinder | 635 | 75 | 0.263 | 0.119 | 0.453 | 0.297 |
 | ClusterONE | 1402 | 346 | 0.429 | 0.227 | 0.554 | 0.280 |
 | Linkcomm | 3396 | 1829 | 0.630 | 0.386 | 0.629 | 0.203 |
DIP | MCL | 4007 | 609 | 0.451 | 0.234 | 0.628 | 0.173 |
 | MCODE | 540 | 95 | 0.210 | 0.108 | 0.402 | 0.211 |
 | MINE | 1135 | 260 | 0.536 | 0.268 | 0.585 | 0.333 |
 | SPICi | 2103 | 403 | 0.455 | 0.228 | 0.583 | 0.245 |
 | SR-MCL | 4825 | 3222 | 0.674 | 0.376 | 0.583 | 0.141 |
 | GMFTP | 2456 | 434 | 0.687 | 0.377 | 0.723 | 0.378 |
 | AP | 5632 | 206 | 0.316 | 0.064 | 0.027 | 0.044 |
 | CFinder | 1729 | 110 | 0.220 | 0.127 | 0.512 | 0.186 |
 | ClusterONE | 2580 | 473 | 0.610 | 0.318 | 0.683 | 0.325 |
 | Linkcomm | 4119 | 4446 | 0.678 | 0.459 | 0.701 | 0.243 |
BioGRID | MCL | 3652 | 335 | 0.314 | 0.158 | 0.520 | 0.126 |
 | MCODE | 1087 | 136 | 0.297 | 0.154 | 0.514 | 0.294 |
 | MINE | 2414 | 409 | 0.576 | 0.308 | 0.663 | 0.304 |
 | SPICi | 2756 | 501 | 0.483 | 0.261 | 0.652 | 0.281 |
 | SR-MCL | 5593 | 1097 | 0.496 | 0.273 | 0.594 | 0.143 |