Table 2 Numbers of significant CpGs (q-value < 0.05) according to five different tests
From: Phenotype prediction based on genome-wide DNA methylation data
| Â | Normal | Normal HPV+ | Normal HPV- | CIN2+(a) | CIN2+(b) | Cancer |
|---|---|---|---|---|---|---|
t | 0 | 0 | 0 | 389 | 233 | 14811 |
0 | 0 | 0 | 452 | 100 | 10383(7) | |
0 | 0 | 0 | 8 | 140 | 4753(1) | |
MWU | 0 | 0 | 0 | 403 | 1008 | 16990 |
0 | 0 | 0 | 408 | 372 | 11320(97) | |
0 | 0 | 0 | 10 | 646 | 5885(46) | |
Bartlett | 2830 | 1837 | 1204 | 3035 | 3444 | 12023 |
1614 | 1154 | 748 | 2208 | 1948 | 12209 | |
1194 | 707 | 468 | 847 | 1489 | 414 | |
Levene | 0 | 0 | 0 | 241 | 2 | 5881 |
0 | 1 | 0 | 326 | 4 | 7178 | |
0 | 0 | 0 | 0 | 0 | 80 | |
Age-corr. | 16 | 385 | 68 | 13 | 89 | 473 |
16 | 330 | 75 | 19 | 52 | 525 | |
| Â | 1 | 49 | 13 | 5 | 31 | 69 |