KVFinder: steered identification of protein cavities as a PyMOL plugin

BMC Bioinformatics

Table 1 Success rate of binding site prediction of different software for 198 known drug targets structures

Method	Top 1	Top 2	Top 3
KVFinder Combined Prediction	67	74	76
MetaPocket 2.0 [24]	61	70	74
KVFinder	51	56	62
LIGSITECS [26]	48	57	61
PASS [6]	35	50	56
Q-SiteFinder [20]	40	54	62
SURFNET [5]	24	30	34
GHECOM [33]	39	51	56
ConCavity [34]	47	53	56
Fpocket [10]	31	48	57
POCASA [8]	43	54	56

ISSN: 1471-2105