| Data set 1 | Data set 2 | Data set 3 | Data set 4 | Data set 5 | Data set 6 | Data set 7 |
---|---|---|---|---|---|---|---|
Tissue type | Colon cancer | Glioblastoma | Glioblastoma | Kidney | Kidney | Breast | Breast |
Platform | HM27 | HM27 | HM450 | HM27 | HM450 | HM27 | HM450 |
# of samples | 20 non-CIMP vs. 6 CIMP | 74 non-CIMP vs. 12 CIMP | 93 non-CIMP vs. 6 CIMP | 50 KIRC vs. 45 non-cancer | 283 KIRC vs. 160 non-cancer | 37 Breast cancer vs. 20 non-cancer | 56 Breast cancer vs. 17 non-cancer |
No filter | 0.31 | 0.22 | NA | 0 | NA | 0.12 | NA |
Filter top 1000 by: | Â | Â | Â | Â | Â | Â | Â |
Random * | 0.34 | 0.27 | 0.40 | 0.004 | 0.005 | 0.12 | 0.20 |
SD-b | 0.19 | 0.07 | 0.49 | 0 | 0.02 | 0 | 0.12 |
SD-m | 0.12 | 0.07 | 0.42 | 0.02 | 0.03 | 0.12 | 0.08 |
MAD | 0.38 | 0.35 | 0.49 | 0 | 0.005 | 0 | 0.14 |
DIP | 0.23 | 0.36 | 0.45 | 0 | 0.005 | 0 | 0.14 |
Precision | 0.08 | 0 | 0.10 | 0.03 | 0.01 | 0.11 | 0.22 |
BQ-GOF | 0.19 | 0 | 0.07 | 0 | 0.01 | 0.25 | 0.23 |
TM-GOF | 0.08 | 0.02 | 0.06 | 0.36 | 0.47 | 0.44 | 0.49 |
TQ-GOF | 0.08 | 0.03 | 0.06 | 0.35 | 0.47 | 0.44 | 0.48 |
BR | 0.12 | 0.02 | 0.11 | 0.02 | 0.02 | 0.23 | 0.19 |
AR | 0.08 | 0.06 | 0.11 | 0.02 | 0.02 | 0.25 | 0.19 |
WAR | 0.12 | 0.07 | 0.45 | 0.02 | 0.01 | 0.11 | 0.10 |
SD-b + TM-GOF** | 0.08 | 0.07 | 0.20 | 0.05 | 0.01 | 0.26 | 0.36 |