inPHAP phased haplotype view for the 100-kb region on chromosome 2 spanning the genes ALMS1 , NAT8 and ALMS1P , after filtering of rare variants with a frequency < 0 .5% across the 1096 human individuals of Phase 1 of the 1000 Genomes Project . The bases A,C,T,G are colored green, blue, red and yellow respectively. Individuals are sorted according to their affiliation with a common population, and subsequently aggregated according to a specific population using the “minimum” aggregation method for SNVs. A: SNVs on the paternal chromosome are shown. B: SNVs on the maternal chromosome are shown. For abbreviations of the population names see Figure 2.