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Table 1 Statistics of the sequence datasets used for the comparative study

From: SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

  Illumina MiSeq reads Roche 454 reads PacBio RS reads
Organism Total reads (Kbp) Total bases (Mbp) Mean read length (bp) Total reads (Kbp) Total bases (Mbp) Mean read length (bp) Total reads (Kbp) Total bases (Mbp) Mean read length (bp)
E. coli K12 MG1655 3,046.4 460.0 151 44.94 232.0 516 383.5 929.1 2,422
E. coli O157:H7 3,794.9 548.5 144 946.2 219.1 231 403.9 1,100.3 2,724
B. trehalosi 1,718.2 249.2 145 351.9 190.7 542 205.1 499.9 2,437
M. haemolytica 1,724.4 249.4 144 NA NA NA 176.0 531.2 3,019
F. tularensis 926.7 199.2 214 178.9 74.5 416 176.4 399.8 2,266
S. enterica 1,943.8 279.8 143 351.5 127.1 361 394.7 1,000.2 2,534
  1. Overall a 90-100× Illumina MiSeq and 45-50× Roche 454 genome coverage is used. For the PacBio dataset an input coverage of ~200× is available.