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Table 1 Statistics of the sequence datasets used for the comparative study

From: SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

 

Illumina MiSeq reads

Roche 454 reads

PacBio RS reads

Organism

Total reads (Kbp)

Total bases (Mbp)

Mean read length (bp)

Total reads (Kbp)

Total bases (Mbp)

Mean read length (bp)

Total reads (Kbp)

Total bases (Mbp)

Mean read length (bp)

E. coli K12 MG1655

3,046.4

460.0

151

44.94

232.0

516

383.5

929.1

2,422

E. coli O157:H7

3,794.9

548.5

144

946.2

219.1

231

403.9

1,100.3

2,724

B. trehalosi

1,718.2

249.2

145

351.9

190.7

542

205.1

499.9

2,437

M. haemolytica

1,724.4

249.4

144

NA

NA

NA

176.0

531.2

3,019

F. tularensis

926.7

199.2

214

178.9

74.5

416

176.4

399.8

2,266

S. enterica

1,943.8

279.8

143

351.5

127.1

361

394.7

1,000.2

2,534

  1. Overall a 90-100× Illumina MiSeq and 45-50× Roche 454 genome coverage is used. For the PacBio dataset an input coverage of ~200× is available.