From: SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
Illumina MiSeq reads | Roche 454 reads | PacBio RS reads | |||||||
---|---|---|---|---|---|---|---|---|---|
Organism | Total reads (Kbp) | Total bases (Mbp) | Mean read length (bp) | Total reads (Kbp) | Total bases (Mbp) | Mean read length (bp) | Total reads (Kbp) | Total bases (Mbp) | Mean read length (bp) |
E. coli K12 MG1655 | 3,046.4 | 460.0 | 151 | 44.94 | 232.0 | 516 | 383.5 | 929.1 | 2,422 |
E. coli O157:H7 | 3,794.9 | 548.5 | 144 | 946.2 | 219.1 | 231 | 403.9 | 1,100.3 | 2,724 |
B. trehalosi | 1,718.2 | 249.2 | 145 | 351.9 | 190.7 | 542 | 205.1 | 499.9 | 2,437 |
M. haemolytica | 1,724.4 | 249.4 | 144 | NA | NA | NA | 176.0 | 531.2 | 3,019 |
F. tularensis | 926.7 | 199.2 | 214 | 178.9 | 74.5 | 416 | 176.4 | 399.8 | 2,266 |
S. enterica | 1,943.8 | 279.8 | 143 | 351.5 | 127.1 | 361 | 394.7 | 1,000.2 | 2,534 |