Figure 1From: BioShell-Threading: versatile Monte Carlo package for protein 3D threadingGraphical representation of an alignment in BioShell-threading. Portrayed alignment (drawn on an alignment matrix between a query and a template) consists of 4 aligned blocks. Red dot is an alignment of ith query’s residue to kth template’s residue. Blue dot is an alignment of jth query’s residue to kth template’s residue.Back to article page