A universal genomic coordinate translator for comparative genomics

BMC Bioinformatics

Table 3 Results of comparing the Human-Mouse-Rat transcript overlaps with Ensembl ComparaDB orthologs for Kraken, HalLiftover, and RATT

The numbers in each row left to right show (i) the overlap, i.e. transcripts predicted by both ComparaDB and the methods Kraken, HalLiftover, and RATT respectively; (ii) transcripts found only in ComparaDB; and (iii) transcripts found by Kraken, HalLiftover, or RATT, but not ComparaDB.

ISSN: 1471-2105