A universal genomic coordinate translator for comparative genomics

BMC Bioinformatics

Table 4 Data demonstrating precision of translation at nucleotide level, shown for coding sequence, between human, mouse, and rat

Target source		Human	Mouse	Rat
Human	Total Items Mapped		241261	225012
	Exactly Matched Items		174432 (72.3%)	156654 (69.6%)
	Exactly Matched at least One Side		231333 (95.9%)	214390 (95.3%)
Mouse	Total Items Mapped	201649		200606
	Exactly Matched Items	157304 (78.0%)		166079 (82.8%)
	Exactly Matched at least One Side	188982 (93.7%)		195357 (97.4%)
Rat	Total Items Mapped	174516	180701
	Exactly Matched Items	132835 (76.1%)	148839 (82.4%)
	Exactly Matched at least One Side	160294 (91.9%)	171099 (94.7%)

For each comparison three items are shown: (i) total number of coding sequences translated from source to target species, (ii) number of items translated that also find an exact match in the reference target annotation (iii) similar to ii but also including those items that exactly match either on their start or stop coordinate. For (ii) and (iii), the percentage of category items matched to the total number mapped is given in brackets.

ISSN: 1471-2105