Components in the test pipelines (leftmost is the standard SnowyOwl pipeline) | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
In Consensus Training Set | Orthologs | * | * | * | * | * | * | * | * | ||||
Contig Models | * | * | * | * | * | * | * | * | * | * | * | ||
GeneMark Models | * | * | * | * | * | * | * | * | * | * | * | ||
In Pooled Augustus Models | Blat-hinted Models | * | * | * | * | * | * | * | * | * | * | * | |
Unhinted Models | * | * | * | * | * | * | * | * | * | * | * | ||
Augustus Domains | * | * | * | * | * | * | * | * | |||||
Merged with Pooled Augustus | GeneMark Models | * | * | * | * | * | * | * | * | * | * | ||
Splice-hinted Models | * | * | * | * | * | * | * | * | * | ||||
Changes in the number of predicted models relative to the standard pipeline | |||||||||||||
A. niger | Representative (21479) | 0 | 6 | 61 | -8 | -21 | -9332 | 12 | -61 | -27 | 13 | 23 | -80 |
Accepted (11374) | 0 | 24 | 54 | 46 | 15 | -1089 | 20 | -35 | -60 | -5 | -21 | -149 | |
T. lanuginosus | Representative (12915) | 0 | 5 | -25 | -21 | -45 | -5367 | 6 | -16 | 11 | 5 | 2 | -11 |
Accepted (7324) | 0 | 28 | 13 | 17 | 0 | -606 | 26 | -7 | 0 | 14 | -19 | -64 | |
P. chrysosporium | Representative (20201) | 0 | 92 | 13 | -5742 | 81 | -6444 | 87 | 44 | 52 | -56 | ||
Accepted (12669) | 0 | 111 | 43 | -1585 | 43 | -2058 | 98 | 48 | 48 | -87 | |||
Recovery of curated models (%) | |||||||||||||
A. niger | Representative | 94.7 | 94.7 | 94.8 | 94.8 | 94.8 | 94.3 | 94.7 | 94.8 | 91.4 | 91.6 | 91.6 | 91.2 |
Accepted | 94.5 | 94.5 | 94.6 | 94.5 | 94.5 | 93.4 | 94.5 | 94.5 | 91.2 | 91.3 | 91.3 | 91.0 | |
T. lanuginosus | Representative | 93.7 | 93.8 | 93.5 | 93.5 | 93.7 | 91.9 | 93.9 | 94.0 | 92.2 | 92.2 | 92.3 | 92.1 |
Accepted | 93.6 | 93.7 | 93.4 | 93.4 | 93.6 | 91.6 | 93.8 | 93.9 | 92.1 | 92.1 | 92.2 | 92.0 | |
P. chrysosporium | Representative | 88.0 | 88.1 | 88.0 | 90.4 | 87.8 | 90.9 | 88.2 | 88.2 | 88.2 | 84.6 | ||
Accepted | 87.3 | 87.3 | 87.1 | 88.4 | 87.1 | 88.5 | 87.3 | 87.4 | 87.4 | 83.8 |